Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015890470.1_cds_XP_016445177.1_40160
CDS Infomation

[gene=LOC107770388] [db_xref=GeneID:107770388] [protein=probable E3 ubiquitin-protein ligase HERC2] [protein_id=XP_016445177.1] [location=complement(join(10945..11138,11298..11453,11536..11664,13096..13290,13799..13938,14747..15285))] [gbkey=CDS]
Sequence

ATGCTATCATTCTATTACCACACTCGTCGGCGTTCTCTTCTCACTTTGCTCCGGCGCCGT
CACCTTTCTTCTTCTTATTTTTCTACTTCGTCCAAAGTTCCTCTTCTTTGGAAATCTGAA
ATCACTGATTCTTCCGAATCAATCACCACCGTCCAATTATATTCCTGGGGCCGTGGTGCT
TCCGGCCAATTAGGTGGCGGTATTGAAGAAATACGAATTTACCCTTCTCCCGTTGCCTCA
TTTTCACTGCCTCCCACTTTTCGTTTATCTTCTCCTATTCCTGGTCGTCTTCCTTCATCT
AATAATTTGGGAAATGCTGACGTGGAAATAGGAATTTCGTGTGGGCTTTTTCATTCAGCT
TTATTAGTTGATGGGAATTTATGGATTTGGGGTAAAGGTGATGGAGGTCGTCTTGGGTTT
GGTCATGAGAATCCTGTTTTTGTTCCTACTTTGAATACTAATTTAGAGTCGGTGAAAAGT
GTTGCTCTTGGTGGGCTTCATTCTGTTGCTCTTAACTCTCTTGGCCAGGTCTTCACTTGG
GGTTACGGTGGTTTTGGTGCTCTTGGTCATACAGTTTATCATAGAGAGCTGGTTCCTAAA
TTAGTTGAGGGCTCTTGGGATACAGAAATATGCCACGTTGCAACCAGTGGGACACATACA
GCTGCTATAACAAAGTCAGGTGAGCTTTATACTTGGGGCCGAGATGAAGGGGATGGTCGA
TTAGGCCTTGGTCCAGGTCGAGGCCCAAATGAAGCAGGTGGTCTTAGCATCCCTTCAAAG
GTAAAAGCACTTCCTGTGAGCGCAGTTGCTGTTTCATGTGGTGGGTTTTTCACAATGGCA
CTTTCTGAAGAGGGAGAGCTTTGGAATTGGGGAGCCAACTCGAACTATGAGCTCGGAAGA
GGTGACAAATTAGGTGGTTGGAAACCACAACCAGTTTCAAGCCTTAAAGGTGTTCGTATT
ATTCAGATAGCTAGTGGGGGATATCATTCTCTAGCTTTGACTGACAAGGGAGAAGTGCTT
TCATGGGGTCATGGAGGCCATGGTCAACTAGGTAATTCTTCTCTTCACAACCAGAAAGTT
CCTATCCCAGTTGAGGCTTTGACCCACGAGAAAGTCATCTATATAGCTTGTGGAGGTTCA
TCGTCGGCAGCTATAACTGATGGCGGGAAGCTGTACATGTGGGGCAATGCACAAGATTGT
CAACTGGGGCTTCCCGGACTGCCAGAGAAACAGTTATCTCCTATTGAAGTCAAGTTTCTC
ATGGAGGATGATGGACTTGGGAGCCATAACGTGCTTTCAGTAGCCATTGGTGCTTCTCAT
GCTATGTGCCTGGTCTCCAGGTCAGGTCACTGA

Peptide Sequence

PEP ID

XP_016445177.1
PEP Infomation

PREDICTED: probable E3 ubiquitin-protein ligase HERC2 [Nicotiana tabacum]
Sequence

MLSFYYHTRRRSLLTLLRRRHLSSSYFSTSSKVPLLWKSEITDSSESITTVQLYSWGRGA
SGQLGGGIEEIRIYPSPVASFSLPPTFRLSSPIPGRLPSSNNLGNADVEIGISCGLFHSA
LLVDGNLWIWGKGDGGRLGFGHENPVFVPTLNTNLESVKSVALGGLHSVALNSLGQVFTW
GYGGFGALGHTVYHRELVPKLVEGSWDTEICHVATSGTHTAAITKSGELYTWGRDEGDGR
LGLGPGRGPNEAGGLSIPSKVKALPVSAVAVSCGGFFTMALSEEGELWNWGANSNYELGR
GDKLGGWKPQPVSSLKGVRIIQIASGGYHSLALTDKGEVLSWGHGGHGQLGNSSLHNQKV
PIPVEALTHEKVIYIACGGSSSAAITDGGKLYMWGNAQDCQLGLPGLPEKQLSPIEVKFL
MEDDGLGSHNVLSVAIGASHAMCLVSRSGH

Transcript Sequence

Gene sequence data has not been registered.